Building python fails on SLES10.1 (python-2.7.2)
 

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Hash: SHA1

Hi!

On SLES 10.1 (glibc-2.4), building Python fails because the modules
crypt and nis cannot be built.
I worked around this by editing the ebuild to exclude these from
building, hoping that they were not needed for any critical
functionality, but maybe there's some other things that can be done!


I get this at the end:

Python build finished, but the necessary bits to build these modules
were not found:
_sqlite3 _tkinter bsddb185
dl imageop sunaudiodev
To find the necessary bits, look in setup.py in detect_modules() for the
module's name.


Failed to build these modules:
crypt nis

The warnings during build are:

building 'nis' extension
x86_64-pc-linux-gnu-gcc -pthread -fPIC -fno-strict-aliasing -O2 -pipe
- -fomit-frame-pointer -fwrapv -I/homes/2/schlarbm/gentoo/usr/include -L/ho
mes/2/schlarbm/gentoo/lib -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG
- -I/homes/2/schlarbm/gentoo/usr/include -I. -IInclude -I./Include -I/tmp/s
chlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Include
- -I/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2
- -c
/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.c
- -o
build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -L. -Wl,-O1 -L.
- -fno-strict-aliasing -O2 -pipe -fomit-frame-pointer -fwrapv
- -I/homes/2/schlarbm/gentoo/usr/include -L/homes/2/schlarbm/gentoo/lib
- -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG -I. -IInclude -I./Include
build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.o
- -L/homes/2/schlarbm/gentoo/usr/lib -L. -lpython2.7 -o
build/lib.linux-x86_64-2.7/nis.so
*** WARNING: renaming "nis" since importing it failed:
build/lib.linux-x86_64-2.7/nis.so: undefined symbol: yp_get_default_domain
building 'crypt' extension
x86_64-pc-linux-gnu-gcc -pthread -fPIC -fno-strict-aliasing -O2 -pipe
- -fomit-frame-pointer -fwrapv -I/homes/2/schlarbm/gentoo/usr/include -L/ho
mes/2/schlarbm/gentoo/lib -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG
- -I/homes/2/schlarbm/gentoo/usr/include -I. -IInclude -I./Include -I/tmp/s
chlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Include
- -I/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2 -
c
/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.c
- -o build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo
/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -L. -Wl,-O1 -L.
- -fno-strict-aliasing -O2 -pipe -fomit-frame-pointer -fwrapv
- -I/homes/2/schlarb
m/gentoo/usr/include -L/homes/2/schlarbm/gentoo/lib
- -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG -I. -IInclude -I./Include
build/temp.linux-x86_
64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.o
- -L/homes/2/schlarbm/gentoo/usr/lib -L. -lpytho
n2.7 -o build/lib.linux-x86_64-2.7/crypt.so
*** WARNING: renaming "crypt" since importing it failed:
build/lib.linux-x86_64-2.7/crypt.so: undefined symbol: crypt

Is there something that can be done?

- --
Moritz Schlarb
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Building python fails on SLES10.1 (python-2.7.2)
 

On 9/24/11 4:58 PM, Moritz Schlarb wrote:
> Hi!
>
> On SLES 10.1 (glibc-2.4), building Python fails because the modules
> crypt and nis cannot be built.
> I worked around this by editing the ebuild to exclude these from
> building, hoping that they were not needed for any critical
> functionality, but maybe there's some other things that can be done!
>
>
> I get this at the end:
>
> Python build finished, but the necessary bits to build these modules
> were not found:
> _sqlite3 _tkinter bsddb185
> dl imageop sunaudiodev
> To find the necessary bits, look in setup.py in detect_modules() for the
> module's name.
>
>
> Failed to build these modules:
> crypt nis
>
> The warnings during build are:
>
> building 'nis' extension
> x86_64-pc-linux-gnu-gcc -pthread -fPIC -fno-strict-aliasing -O2 -pipe
> -fomit-frame-pointer -fwrapv -I/homes/2/schlarbm/gentoo/usr/include -L/ho
> mes/2/schlarbm/gentoo/lib -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG
> -I/homes/2/schlarbm/gentoo/usr/include -I. -IInclude -I./Include -I/tmp/s
> chlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Include
> -I/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2
> -c
> /tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.c
> -o
> build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.o
> x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -L. -Wl,-O1 -L.
> -fno-strict-aliasing -O2 -pipe -fomit-frame-pointer -fwrapv
> -I/homes/2/schlarbm/gentoo/usr/include -L/homes/2/schlarbm/gentoo/lib
> -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG -I. -IInclude -I./Include
> build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.o
> -L/homes/2/schlarbm/gentoo/usr/lib -L. -lpython2.7 -o
> build/lib.linux-x86_64-2.7/nis.so
> *** WARNING: renaming "nis" since importing it failed:
> build/lib.linux-x86_64-2.7/nis.so: undefined symbol: yp_get_default_domain
> building 'crypt' extension
> x86_64-pc-linux-gnu-gcc -pthread -fPIC -fno-strict-aliasing -O2 -pipe
> -fomit-frame-pointer -fwrapv -I/homes/2/schlarbm/gentoo/usr/include -L/ho
> mes/2/schlarbm/gentoo/lib -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG
> -I/homes/2/schlarbm/gentoo/usr/include -I. -IInclude -I./Include -I/tmp/s
> chlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Include
> -I/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2 -
> c
> /tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.c
> -o build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo
> /portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.o
> x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -L. -Wl,-O1 -L.
> -fno-strict-aliasing -O2 -pipe -fomit-frame-pointer -fwrapv
> -I/homes/2/schlarb
> m/gentoo/usr/include -L/homes/2/schlarbm/gentoo/lib
> -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG -I. -IInclude -I./Include
> build/temp.linux-x86_
> 64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.o
> -L/homes/2/schlarbm/gentoo/usr/lib -L. -lpytho
> n2.7 -o build/lib.linux-x86_64-2.7/crypt.so
> *** WARNING: renaming "crypt" since importing it failed:
> build/lib.linux-x86_64-2.7/crypt.so: undefined symbol: crypt
>
> Is there something that can be done?
>
>
>

There is an open bug:

https://bugs.gentoo.org/show_bug.cgi?id=381163

Building python fails on SLES10.1 (python-2.7.2)
 

On Sat, Sep 24, 2011 at 11:21 AM, justin <jlec@gentoo.org> wrote:
> On 9/24/11 4:58 PM, Moritz Schlarb wrote:
>> Hi!
>>
>> On SLES 10.1 (glibc-2.4), building Python fails because the modules
>> crypt and nis cannot be built.
>> I worked around this by editing the ebuild to exclude these from
>> building, hoping that they were not needed for any critical
>> functionality, but maybe there's some other things that can be done!
>>
>>
>> I get this at the end:
>>
>> Python build finished, but the necessary bits to build these modules
>> were not found:
>> _sqlite3 * * * * * _tkinter * * * * * bsddb185
>> dl * * * * * * * * imageop * * * * * *sunaudiodev
>> To find the necessary bits, look in setup.py in detect_modules() for the
>> module's name.
>>
>>
>> Failed to build these modules:
>> crypt * * * * * * *nis
>>
>> The warnings during build are:
>>
>> building 'nis' extension
>> x86_64-pc-linux-gnu-gcc -pthread -fPIC -fno-strict-aliasing -O2 -pipe
>> -fomit-frame-pointer -fwrapv -I/homes/2/schlarbm/gentoo/usr/include -L/ho
>> mes/2/schlarbm/gentoo/lib -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG
>> -I/homes/2/schlarbm/gentoo/usr/include -I. -IInclude -I./Include -I/tmp/s
>> chlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Include
>> -I/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2
>> -c
>> /tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.c
>> -o
>> build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.o
>> x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -L. -Wl,-O1 -L.
>> -fno-strict-aliasing -O2 -pipe -fomit-frame-pointer -fwrapv
>> -I/homes/2/schlarbm/gentoo/usr/include -L/homes/2/schlarbm/gentoo/lib
>> -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG -I. -IInclude -I./Include
>> build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.o
>> -L/homes/2/schlarbm/gentoo/usr/lib -L. -lpython2.7 -o
>> build/lib.linux-x86_64-2.7/nis.so
>> *** WARNING: renaming "nis" since importing it failed:
>> build/lib.linux-x86_64-2.7/nis.so: undefined symbol: yp_get_default_domain
>> building 'crypt' extension
>> x86_64-pc-linux-gnu-gcc -pthread -fPIC -fno-strict-aliasing -O2 -pipe
>> -fomit-frame-pointer -fwrapv -I/homes/2/schlarbm/gentoo/usr/include -L/ho
>> mes/2/schlarbm/gentoo/lib -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG
>> -I/homes/2/schlarbm/gentoo/usr/include -I. -IInclude -I./Include -I/tmp/s
>> chlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Include
>> -I/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2 -
>> c
>> /tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.c
>> -o build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo
>> /portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.o
>> x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -L. -Wl,-O1 -L.
>> -fno-strict-aliasing -O2 -pipe -fomit-frame-pointer -fwrapv
>> -I/homes/2/schlarb
>> m/gentoo/usr/include -L/homes/2/schlarbm/gentoo/lib
>> -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG -I. -IInclude -I./Include
>> build/temp.linux-x86_
>> 64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.o
>> -L/homes/2/schlarbm/gentoo/usr/lib -L. -lpytho
>> n2.7 -o build/lib.linux-x86_64-2.7/crypt.so
>> *** WARNING: renaming "crypt" since importing it failed:
>> build/lib.linux-x86_64-2.7/crypt.so: undefined symbol: crypt
>>
>> Is there something that can be done?
>>
>>
>>
>
> There is an open bug:
>
> https://bugs.gentoo.org/show_bug.cgi?id=381163
>
>

I had the same problem on CentOS. As a workaround I disabled the crypt
and nis modules in the ebuild

Building python fails on SLES10.1 (python-2.7.2)
 

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Hash: SHA1

I've got it now!

The problem was, that the module-libraries weren't even linked to the
corresponding system libraries

TL;DR: export LDFLAGS="-L/lib" && emerge python

On a native gentoo system, I got:
$ ldd crypt.so
...
libcrypt.so.1 => /lib/libcrypt.so.1 (0xb7690000)
...
$ equery b /lib/libcrypt.so.1
* Searching for /lib/libcrypt.so.1 ...
sys-libs/glibc-2.12.2 (/lib/libcrypt-2.12.2.so)
sys-libs/glibc-2.12.2 (/lib/libcrypt.so.1 -> libcrypt-2.12.2.so)

$ ldd nis.so
...
libnsl.so.1 => /lib/libnsl.so.1 (0xb7713000)
...
$ equery b /lib/libnsl.so.1
* Searching for /lib/libnsl.so.1 ...
sys-libs/glibc-2.12.2 (/lib/libnsl.so.1 -> libnsl-2.12.2.so)
sys-libs/glibc-2.12.2 (/lib/libnsl-2.12.2.so)

But crypt_failed.so and nis_failed.so in the prefix build dir just
linked to the default libraries (which I excluded up there) and not the
ones that define the symbols they need esepecially.

Propably it would be better to do that with -rpath but I haven't figured
that out yet :D

Am 24.09.2011 23:57, schrieb Martin Luessi:
> On Sat, Sep 24, 2011 at 11:21 AM, justin <jlec@gentoo.org> wrote:
>> On 9/24/11 4:58 PM, Moritz Schlarb wrote:
>>> Hi!
>>>
>>> On SLES 10.1 (glibc-2.4), building Python fails because the modules
>>> crypt and nis cannot be built.
>>> I worked around this by editing the ebuild to exclude these from
>>> building, hoping that they were not needed for any critical
>>> functionality, but maybe there's some other things that can be done!
>>>
>>>
>>> I get this at the end:
>>>
>>> Python build finished, but the necessary bits to build these modules
>>> were not found:
>>> _sqlite3 _tkinter bsddb185
>>> dl imageop sunaudiodev
>>> To find the necessary bits, look in setup.py in detect_modules() for the
>>> module's name.
>>>
>>>
>>> Failed to build these modules:
>>> crypt nis
>>>
>>> The warnings during build are:
>>>
>>> building 'nis' extension
>>> x86_64-pc-linux-gnu-gcc -pthread -fPIC -fno-strict-aliasing -O2 -pipe
>>> -fomit-frame-pointer -fwrapv -I/homes/2/schlarbm/gentoo/usr/include -L/ho
>>> mes/2/schlarbm/gentoo/lib -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG
>>> -I/homes/2/schlarbm/gentoo/usr/include -I. -IInclude -I./Include -I/tmp/s
>>> chlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Include
>>> -I/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2
>>> -c
>>> /tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.c
>>> -o
>>> build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.o
>>> x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -L. -Wl,-O1 -L.
>>> -fno-strict-aliasing -O2 -pipe -fomit-frame-pointer -fwrapv
>>> -I/homes/2/schlarbm/gentoo/usr/include -L/homes/2/schlarbm/gentoo/lib
>>> -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG -I. -IInclude -I./Include
>>> build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/nismodule.o
>>> -L/homes/2/schlarbm/gentoo/usr/lib -L. -lpython2.7 -o
>>> build/lib.linux-x86_64-2.7/nis.so
>>> *** WARNING: renaming "nis" since importing it failed:
>>> build/lib.linux-x86_64-2.7/nis.so: undefined symbol: yp_get_default_domain
>>> building 'crypt' extension
>>> x86_64-pc-linux-gnu-gcc -pthread -fPIC -fno-strict-aliasing -O2 -pipe
>>> -fomit-frame-pointer -fwrapv -I/homes/2/schlarbm/gentoo/usr/include -L/ho
>>> mes/2/schlarbm/gentoo/lib -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG
>>> -I/homes/2/schlarbm/gentoo/usr/include -I. -IInclude -I./Include -I/tmp/s
>>> chlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Include
>>> -I/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2 -
>>> c
>>> /tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.c
>>> -o build/temp.linux-x86_64-2.7/tmp/schlarbm/gentoo
>>> /portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.o
>>> x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -L. -Wl,-O1 -L.
>>> -fno-strict-aliasing -O2 -pipe -fomit-frame-pointer -fwrapv
>>> -I/homes/2/schlarb
>>> m/gentoo/usr/include -L/homes/2/schlarbm/gentoo/lib
>>> -L/homes/2/schlarbm/gentoo/usr/lib -DNDEBUG -I. -IInclude -I./Include
>>> build/temp.linux-x86_
>>> 64-2.7/tmp/schlarbm/gentoo/portage/dev-lang/python-2.7.2/work/Python-2.7.2/Modules/cryptmodule.o
>>> -L/homes/2/schlarbm/gentoo/usr/lib -L. -lpytho
>>> n2.7 -o build/lib.linux-x86_64-2.7/crypt.so
>>> *** WARNING: renaming "crypt" since importing it failed:
>>> build/lib.linux-x86_64-2.7/crypt.so: undefined symbol: crypt
>>>
>>> Is there something that can be done?
>>>
>>>
>>>
>>
>> There is an open bug:
>>
>> https://bugs.gentoo.org/show_bug.cgi?id=381163
>>
>>
>
> I had the same problem on CentOS. As a workaround I disabled the crypt
> and nis modules in the ebuild
>
>

- --
Moritz Schlarb
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Building python fails on SLES10.1 (python-2.7.2)
 

On 08-10-2011 14:24:06 +0200, Moritz Schlarb wrote:
> I've got it now!
>
> The problem was, that the module-libraries weren't even linked to the
> corresponding system libraries

Can you explain this a bit more? How do the prefix-built libs look
like? E.g. what's missing there?

> TL;DR: export LDFLAGS="-L/lib" && emerge python
>
> On a native gentoo system, I got:
> $ ldd crypt.so
> ...
> libcrypt.so.1 => /lib/libcrypt.so.1 (0xb7690000)
> ...
> $ equery b /lib/libcrypt.so.1
> * Searching for /lib/libcrypt.so.1 ...
> sys-libs/glibc-2.12.2 (/lib/libcrypt-2.12.2.so)
> sys-libs/glibc-2.12.2 (/lib/libcrypt.so.1 -> libcrypt-2.12.2.so)
>
> $ ldd nis.so
> ...
> libnsl.so.1 => /lib/libnsl.so.1 (0xb7713000)
> ...
> $ equery b /lib/libnsl.so.1
> * Searching for /lib/libnsl.so.1 ...
> sys-libs/glibc-2.12.2 (/lib/libnsl.so.1 -> libnsl-2.12.2.so)
> sys-libs/glibc-2.12.2 (/lib/libnsl-2.12.2.so)
>
> But crypt_failed.so and nis_failed.so in the prefix build dir just
> linked to the default libraries (which I excluded up there) and not the
> ones that define the symbols they need esepecially.
>
> Propably it would be better to do that with -rpath but I haven't figured
> that out yet :D


--
Fabian Groffen
Gentoo on a different level