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Jeffrey Ratcliffe 11-19-2010 09:09 AM

Error bootstrapping prefix on RHEL5 amd64
 
I'm trying to bootstrap prefix on a RHEL5 amd64 box and I'm getting
stuck emerging openssh.

I'm getting many linking errors such as:

openbsd-compat//libopenbsd-compat.a(port-tun.o): In function `recv':
port-tun.c:(.text+0x8b0): multiple definition of `recv'
ssh.o:ssh.c:(.text+0x2bf0): first defined here
collect2: ld returned 1 exit status
make: *** [ssh] Error 1
** ERROR: net-misc/openssh-5.5_p1-r2 failed:
** * (no error message)
**
** Call stack:
** * * ebuild.sh, line *53: *Called call-ebuildshell 'src_compile'
** * environment, line 648: *Called src_compile
** * environment, line 3505: *Called die
** The specific snippet of code:
** * * * emake || die

I assume that the problem is some incompatibility between gcc-4.4.5 and
openssh-5.5_p1-r2 from the prefix with kernel 2.6.18 and glibc-2.5-49
from the host. There doesn't seem to be an ebuild for linux-headers
2.6.18, and I assume that trying to emerge uclibc or glibc would be a
very bad idea.

Any ideas on how to get openssh to emerge?

Regards

Jeff

$ emerge --info =net-misc/openssh-5.5_p1-r2
Portage 2.2.01.15553-prefix (prefix/linux/amd64, gcc-4.4.5, unavailable,
2.6.18-194.3.1.el5 x86_64)
================================================== ===============
* * * * * * * * * * * *System Settings
================================================== ===============
System uname: Linux-2.6.18-194.3.1.el5
Timestamp of tree: Thu, 21 Oct 2010 21:41:20 +0000
app-shells/bash: * * 4.1_p7
dev-lang/python: * * 2.6.5-r2
sys-devel/autoconf: *2.65-r1
sys-devel/automake: *1.11.1
sys-devel/binutils: *2.20.51.0.10
sys-devel/gcc: * * * 4.2.4-r01.2, 4.4.5
sys-devel/gcc-config: 1.4.1-r00.2
sys-devel/libtool: * 2.2.10
sys-devel/make: * * *3.81-r2
virtual/os-headers: *2.6.35 (sys-kernel/linux-headers)
ACCEPT_KEYWORDS="~amd64-linux"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf
/etc/terminfo"
CPPFLAGS="-I/home/jeff/rhel5-amd64-linux/usr/include"
CXXFLAGS="-O2 -pipe"
DISTDIR="/home/jeff/rhel5-amd64-linux/usr/portage/distfiles"
FEATURES="assume-digests collision-protect distlocks fixlafiles
fixpackages parallel-fetch preserve-libs protect-owned sfperms strict
unknown-features-warn unmerge-logs unmerge-orphans userfetch"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-L/home/jeff/rhel5-amd64-linux/usr/lib
-R/home/jeff/rhel5-amd64-linux/usr/lib
-L/home/jeff/rhel5-amd64-linux/lib -R/home/jeff/rhel5-amd64-linux/lib"
PKGDIR="/home/jeff/rhel5-amd64-linux/usr/portage/packages"
PORTAGE_CONFIGROOT="/home/jeff/rhel5-amd64-linux/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times
--compress --force --whole-file --delete --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/home/jeff/rhel5-amd64-linux/var/tmp"
PORTDIR="/home/jeff/rhel5-amd64-linux/usr/portage"
SYNC="rsync://rsync.prefix.freens.org/gentoo-portage-prefix"
USE="amd64 bootstrap bzip2 cracklib crypt cxx dri iconv ipv6 mmx modules
mudflap ncurses nptl nptlonly openmp perl pppd prefix readline sse sse2
sysfs tcpd unicode xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp
atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968
fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx
via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare
dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter
mmap_emul mulaw multi null plug rate route share shm softvol"
APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon
authn_dbm authn_default authn_file authz_dbm authz_default
authz_groupfile authz_host authz_owner authz_user autoindex cache cgi
cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter
file_cache filter headers include info log_config logio mem_cache mime
mime_magic negotiation rewrite setenvif speling status unique_id userdir
usertrack vhost_alias" COLLECTD_PLUGINS="df interface irq load memory
rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm
earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea
ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf
superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse
evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780
lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php5-2"
RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel
mach64 mga neomagic nouveau nv r128 radeon savage sis tdfx trident vesa
via vmware voodoo" XTABLES_ADDONS="quota2 psd pknock lscan length2
ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq
steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: *CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL,
LINGUAS, MAKEOPTS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS,
PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY

Fabian Groffen 11-19-2010 09:11 AM

Error bootstrapping prefix on RHEL5 amd64
 
On 19-11-2010 11:09:27 +0100, Jeffrey Ratcliffe wrote:
> I'm trying to bootstrap prefix on a RHEL5 amd64 box and I'm getting
> stuck emerging openssh.
>
> I'm getting many linking errors such as:
>
> openbsd-compat//libopenbsd-compat.a(port-tun.o): In function `recv':
> port-tun.c:(.text+0x8b0): multiple definition of `recv'

> Any ideas on how to get openssh to emerge?

we've seen this before, and there was some cflag to use for this to
solve this. I forget which one though :/


--
Fabian Groffen
Gentoo on a different level

Jeffrey Ratcliffe 11-19-2010 11:12 AM

Error bootstrapping prefix on RHEL5 amd64
 
On 19 November 2010 11:11, Fabian Groffen <grobian@gentoo.org> wrote:
> we've seen this before, and there was some cflag to use for this to
> solve this. *I forget which one though :/

Thanks for the hint.

prefixing -Wl,--allow-multiple-definition to LDFLAGS seems to do the
trick. I had to modify the instructions on LDFLAGS per package[1] by
adding ${PREFIX} in various places.

Regards

Jeff

[1] http://www.gentoo-wiki.info/TIP_Safe_LDFLAGS#Per_package_LDFLAGS

Jeremy Olexa 11-19-2010 03:05 PM

Error bootstrapping prefix on RHEL5 amd64
 
On Fri, 19 Nov 2010 13:12:59 +0100, Jeffrey Ratcliffe wrote:

On 19 November 2010 11:11, Fabian Groffen <grobian@gentoo.org> wrote:

we've seen this before, and there was some cflag to use for this to
solve this. *I forget which one though :/


Thanks for the hint.

prefixing -Wl,--allow-multiple-definition to LDFLAGS seems to do the
trick. I had to modify the instructions on LDFLAGS per package[1] by
adding ${PREFIX} in various places.


It actually looks like bug 289757 to me.
https://bugs.gentoo.org/show_bug.cgi?id=289757

-Jeremy



Regards

Jeff

[1] http://www.gentoo-wiki.info/TIP_Safe_LDFLAGS#Per_package_LDFLAGS

Jeffrey Ratcliffe 11-23-2010 07:36 AM

Error bootstrapping prefix on RHEL5 amd64
 
On 19 November 2010 17:05, Jeremy Olexa <darkside@gentoo.org> wrote:
> It actually looks like bug 289757 to me.
> https://bugs.gentoo.org/show_bug.cgi?id=289757

Indeed. For the record, I was able to emerge -e system after setting
USE=vanilla for gcc and appending -fgnu89-inline to CFLAGS for cpio.

To set CFLAGS on a per-package basis, I created
etc/portage/env/<category>/<package>. This seems much neater than the
instructions on the wiki[1]. Why doesn't the wiki explain this method?

Now I can't emerge cairo, but that is for a different thread.

Regards

Jeff

[1] http://www.gentoo-wiki.info/TIP_Safe_LDFLAGS#Per_package_LDFLAGS

Jeremy Olexa 11-23-2010 01:09 PM

Error bootstrapping prefix on RHEL5 amd64
 
On 11/23/2010 02:36 AM, Jeffrey Ratcliffe wrote:

On 19 November 2010 17:05, Jeremy Olexa<darkside@gentoo.org> wrote:

It actually looks like bug 289757 to me.
https://bugs.gentoo.org/show_bug.cgi?id=289757


Indeed. For the record, I was able to emerge -e system after setting
USE=vanilla for gcc and appending -fgnu89-inline to CFLAGS for cpio.

To set CFLAGS on a per-package basis, I created
etc/portage/env/<category>/<package>. This seems much neater than the
instructions on the wiki[1]. Why doesn't the wiki explain this method?


The gentoo-wiki is not maintained, endorsed, or considered documentation
by the Gentoo Developer community. Feel free to add stuff there
yourself, though.


-Jeremy


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