Octave crashed
Hello,
I have a problem with octave, see the following session from octave, it is very simple (I want to compute eig(a) and then crash): ------------------------------------------------------- $ octave GNU Octave, version 3.2.4 Copyright (C) 2009 John W. Eaton and others. This is free software; see the source code for copying conditions. There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. For details, type `warranty'. Octave was configured for "i486-pc-linux-gnu". Additional information about Octave is available at http://www.octave.org. Please contribute if you find this software useful. For more information, visit http://www.octave.org/help-wanted.html Report bugs to <bug@octave.org> (but first, please read http://www.octave.org/bugs.html to learn how to write a helpful report). For information about changes from previous versions, type `news'. warning: mark_as_command is obsolete and will be removed from a future version of Octave octave:1> a=rand(3,3) a = 0.189941 0.570931 0.517541 0.092924 0.449368 0.680880 0.146931 0.266066 0.706786 octave:2> eig(a) panic: Illegal instruction -- stopping myself... attempting to save variables to `octave-core'... save to `octave-core' complete Illegal instruction ------------------------------------------------------- I use Debian Squueze 6.0. I have installed every package with octave-* $ uname -a Linux S1 2.6.32-5-686 #1 SMP Wed Jan 12 04:01:41 UTC 2011 i686 GNU/Linux Do you have also such problem or it is only specific to me on my hardware. Zbigniew -- To UNSUBSCRIBE, email to debian-user-REQUEST@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org Archive: 201103101057.03168.cblasius@gmail.com">http://lists.debian.org/201103101057.03168.cblasius@gmail.com |
Octave crashed
On 3/10/11, Zbigniew Komarnicki <cblasius@gmail.com> wrote:
> octave:1> a=rand(3,3) > a = > > 0.189941 0.570931 0.517541 > 0.092924 0.449368 0.680880 > 0.146931 0.266066 0.706786 > > octave:2> eig(a) I had the same problem, but on a non-Debian system. On my system the problem was caused by using the SSE3 atlas libraries and was fixed by installing with SSE2 libraries. -- To UNSUBSCRIBE, email to debian-user-REQUEST@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org Archive: AANLkTimOFuh0x=RUq4pC16VoMoDEyJ24UNkw+bu8OrNn@mail .gmail.com">http://lists.debian.org/AANLkTimOFuh0x=RUq4pC16VoMoDEyJ24UNkw+bu8OrNn@mail .gmail.com |
Octave crashed
On Thursday 10 of March 2011 11:35:14 George wrote:
> I had the same problem, but on a non-Debian system. On my system the > problem was caused by using the SSE3 atlas libraries and was fixed by > installing with SSE2 libraries. Thank you for your help. I try to search atlas with sse, because my computer is old -------------------------------------------------------------------------------- $ cat /proc/cpuinfo processor : 0 vendor_id : AuthenticAMD cpu family : 6 model : 8 model name : AMD Athlon(tm) XP 2000+ stepping : 1 cpu MHz : 1660.266 cache size : 256 KB fdiv_bug : no hlt_bug : no f00f_bug : no coma_bug : no fpu : yes fpu_exception : yes cpuid level : 1 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 mmx fxsr sse syscall mmxext 3dnowext 3dnow up bogomips : 3320.53 clflush size : 32 cache_alignment : 32 address sizes : 34 bits physical, 32 bits virtual power management: ts -------------------------------------------------------------------------------- and haven't sse2 or sse3. I do ------------------------------------------------------------------------------------ $ dpkg -l *atlas* Desired=Unknown/Install/Remove/Purge/Hold | Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst/trig-aWait/Trig-pend |/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad) ||/ Name Version Description +++-==================-=============- ====================================== un atlas-doc <none> (no description available) un atlas2 <none> (no description available) un atlas2-dev <none> (no description available) un atlas2-headers <none> (no description available) un atlas3-base <none> (no description available) un atlas3-doc <none> (no description available) un libatlas-base-dev <none> (no description available) ii libatlas-doc 3.8.3-27 Automatically Tuned Linear Algebra Software, documentation un libatlas.so.3gf <none> (no description available) un libatlas3gf-2.0 <none> (no description available) un libatlas3gf-altivec <none> (no description available) un libatlas3gf-amd64sse3 <none> (no description available) ii libatlas3gf-base 3.8.3-27 Automatically Tuned Linear Algebra Software, generic shared un libatlas3gf-core2sse3 <none> (no description available) un libatlas3gf-corei7sse3 <none> (no description available) un libatlas3gf-ev6 <none> (no description available) un libatlas3gf-sse <none> (no description available) un libatlas3gf-sse2 <none> (no description available) un libatlas3gf-sse3 <none> (no description available) un libatlas3gf-v9 <none> (no description available) ---------------------------------------------------------------------------- I found this un libatlas3gf-sse <none> (no description available) but after: ------------------------------------------------------------------------------------ # aptitude install libatlas3gf-sse No candidate version found for libatlas3gf-sse No candidate version found for libatlas3gf-sse No packages will be installed, upgraded, or removed. 0 packages upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B of archives. After unpacking 0 B will be used. ------------------------------------------------------------------------------------ This package is unavailable so what to do to solve this problem ? Any help will be very appreciated. Zbigniew -- To UNSUBSCRIBE, email to debian-user-REQUEST@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org Archive: 201103101856.16274.cblasius@gmail.com">http://lists.debian.org/201103101856.16274.cblasius@gmail.com |
Octave crashed
On 3/10/11, Zbigniew Komarnicki <cblasius@gmail.com> wrote:
> This package is unavailable so what to do to solve this problem ? > Any help will be very appreciated. I tried to find packages that would help you choose different optimizations, but I was unable to find any. Maybe you can try posting to the debian maintaners' development list at http://pkg-octave.alioth.debian.org/#lists . They should be able to help. -- To UNSUBSCRIBE, email to debian-user-REQUEST@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org Archive: AANLkTikoDrUi6DYaj26ZXbMt6QwCpv9x+DEtYOXxO3mA@mail .gmail.com">http://lists.debian.org/AANLkTikoDrUi6DYaj26ZXbMt6QwCpv9x+DEtYOXxO3mA@mail .gmail.com |
Octave crashed
Hi
2011/3/10 Zbigniew Komarnicki <cblasius@gmail.com> On Thursday 10 of March 2011 11:35:14 George wrote: > I had the same problem, but on a non-Debian system. On my system the > problem was caused by using the SSE3 atlas libraries and was fixed by > installing with SSE2 libraries. Thank you for your help. I try to search atlas with sse, because my computer is old -------------------------------------------------------------------------------- What is the answer to the command sudo update-alternatives --list liblapack.so.3gf *In my case I have to adjust this library to /usr/lib/lapack/liblapack.so.3gf. I did it with sudo update-alternatives --config liblapack.so.3gf I think the package you need is libatlas3gf-base. hope this helps -- -- Pedro Aladar Tonelli -- |
Octave crashed
On Saturday 12 of March 2011 22:56:48 you wrote:
> 2011/3/12 Zbigniew Komarnicki <cblasius@gmail.com> > > > I do this but with no success. Thank you anyway. > > > > Zbigniew > > Hmm. But i dont think the problem has to do with the processor, since I am > running octave in a very > similar one (athlon xp 2600). I am attaching the result of "ldd > /usr/bin/octave" so you can inspect if we have the same > libraries. Good luck > > ldd /usr/bin/octave > > linux-gate.so.1 => (0xb78c2000) > liboctinterp.so => /usr/lib/octave-3.2.4/liboctinterp.so (0xb6c0d000) > liboctave.so => /usr/lib/octave-3.2.4/liboctave.so (0xb614d000) > libcruft.so => /usr/lib/octave-3.2.4/libcruft.so (0xb60d6000) > libumfpack.so.5.4.0 => /usr/lib/libumfpack.so.5.4.0 (0xb6011000) > libamd.so.2.2.0 => /usr/lib/libamd.so.2.2.0 (0xb6009000) > libcamd.so.2.2.0 => /usr/lib/libcamd.so.2.2.0 (0xb6000000) > libcolamd.so.2.7.1 => /usr/lib/libcolamd.so.2.7.1 (0xb5ff9000) > libcholmod.so.1.7.1 => /usr/lib/libcholmod.so.1.7.1 (0xb5f38000) > libccolamd.so.2.7.1 => /usr/lib/libccolamd.so.2.7.1 (0xb5f2e000) > libcxsparse.so.2.2.3 => /usr/lib/libcxsparse.so.2.2.3 (0xb5f02000) > liblapack.so.3gf => /usr/lib/liblapack.so.3gf (0xb56fd000) > libblas.so.3gf => /usr/lib/libblas.so.3gf (0xb5681000) > libfftw3.so.3 => /usr/lib/libfftw3.so.3 (0xb553c000) > libfftw3f.so.3 => /usr/lib/libfftw3f.so.3 (0xb53ff000) > libqrupdate.so.1 => /usr/lib/libqrupdate.so.1 (0xb53e1000) > libarpack.so.2 => /usr/lib/libarpack.so.2 (0xb5394000) > libftgl.so.2 => /usr/lib/libftgl.so.2 (0xb5367000) > libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0xb52e0000) > libz.so.1 => /usr/lib/libz.so.1 (0xb52cc000) > libGL.so.1 => /usr/lib/libGL.so.1 (0xb5267000) > libGLU.so.1 => /usr/lib/libGLU.so.1 (0xb51f7000) > libX11.so.6 => /usr/lib/libX11.so.6 (0xb50d6000) > libreadline.so.6 => /lib/libreadline.so.6 (0xb50a1000) > libncurses.so.5 => /lib/libncurses.so.5 (0xb5067000) > libdl.so.2 => /lib/i686/cmov/libdl.so.2 (0xb5063000) > libhdf5.so.6 => /usr/lib/libhdf5.so.6 (0xb4cdb000) > libgfortran.so.3 => /usr/lib/libgfortran.so.3 (0xb4c1a000) > libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0xb4b2b000) > libm.so.6 => /lib/i686/cmov/libm.so.6 (0xb4b05000) > libgcc_s.so.1 => /lib/libgcc_s.so.1 (0xb4ae9000) > libpthread.so.0 => /lib/i686/cmov/libpthread.so.0 (0xb4ad0000) > libc.so.6 => /lib/i686/cmov/libc.so.6 (0xb498a000) > libpcre.so.3 => /lib/libpcre.so.3 (0xb494c000) > libXext.so.6 => /usr/lib/libXext.so.6 (0xb493d000) > libXxf86vm.so.1 => /usr/lib/libXxf86vm.so.1 (0xb4938000) > libXdamage.so.1 => /usr/lib/libXdamage.so.1 (0xb4935000) > libXfixes.so.3 => /usr/lib/libXfixes.so.3 (0xb492f000) > libdrm.so.2 => /usr/lib/libdrm.so.2 (0xb4925000) > libxcb.so.1 => /usr/lib/libxcb.so.1 (0xb490c000) > /lib/ld-linux.so.2 (0xb78c3000) > librt.so.1 => /lib/i686/cmov/librt.so.1 (0xb4903000) > libXau.so.6 => /usr/lib/libXau.so.6 (0xb48ff000) > libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0xb48fa000) Thank you for your help. I have the same but with different address allocation (oxZZZZZZZZ). Plase, see $ ldd /usr/bin/octave linux-gate.so.1 => (0xb7876000) liboctinterp.so => /usr/lib/octave-3.2.4/liboctinterp.so (0xb6bc1000) liboctave.so => /usr/lib/octave-3.2.4/liboctave.so (0xb6101000) libcruft.so => /usr/lib/octave-3.2.4/libcruft.so (0xb608a000) libumfpack.so.5.4.0 => /usr/lib/libumfpack.so.5.4.0 (0xb5fd1000) libamd.so.2.2.0 => /usr/lib/libamd.so.2.2.0 (0xb5fc9000) libcamd.so.2.2.0 => /usr/lib/libcamd.so.2.2.0 (0xb5fc0000) libcolamd.so.2.7.1 => /usr/lib/libcolamd.so.2.7.1 (0xb5fb9000) libcholmod.so.1.7.1 => /usr/lib/libcholmod.so.1.7.1 (0xb5ef8000) libccolamd.so.2.7.1 => /usr/lib/libccolamd.so.2.7.1 (0xb5eee000) libcxsparse.so.2.2.3 => /usr/lib/libcxsparse.so.2.2.3 (0xb5ec2000) liblapack.so.3gf => /usr/lib/liblapack.so.3gf (0xb568e000) libblas.so.3gf => /usr/lib/libblas.so.3gf (0xb5385000) libfftw3.so.3 => /usr/lib/libfftw3.so.3 (0xb5240000) libfftw3f.so.3 => /usr/lib/libfftw3f.so.3 (0xb5103000) libqrupdate.so.1 => /usr/lib/libqrupdate.so.1 (0xb50e5000) libarpack.so.2 => /usr/lib/libarpack.so.2 (0xb5098000) libftgl.so.2 => /usr/lib/libftgl.so.2 (0xb506b000) libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0xb4ff4000) libz.so.1 => /usr/lib/libz.so.1 (0xb4fe0000) libGL.so.1 => /usr/lib/libGL.so.1 (0xb4f7b000) libGLU.so.1 => /usr/lib/libGLU.so.1 (0xb4f0b000) libX11.so.6 => /usr/lib/libX11.so.6 (0xb4ded000) libreadline.so.6 => /lib/libreadline.so.6 (0xb4db8000) libncurses.so.5 => /lib/libncurses.so.5 (0xb4d7e000) libdl.so.2 => /lib/i686/cmov/libdl.so.2 (0xb4d7a000) libhdf5.so.6 => /usr/lib/libhdf5.so.6 (0xb49f2000) libgfortran.so.3 => /usr/lib/libgfortran.so.3 (0xb492c000) libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0xb4837000) libm.so.6 => /lib/i686/cmov/libm.so.6 (0xb4811000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0xb47f3000) libpthread.so.0 => /lib/i686/cmov/libpthread.so.0 (0xb47da000) libc.so.6 => /lib/i686/cmov/libc.so.6 (0xb4694000) libpcre.so.3 => /lib/libpcre.so.3 (0xb4660000) libXext.so.6 => /usr/lib/libXext.so.6 (0xb4651000) libXxf86vm.so.1 => /usr/lib/libXxf86vm.so.1 (0xb464c000) libXdamage.so.1 => /usr/lib/libXdamage.so.1 (0xb4649000) libXfixes.so.3 => /usr/lib/libXfixes.so.3 (0xb4643000) libdrm.so.2 => /usr/lib/libdrm.so.2 (0xb4639000) libxcb.so.1 => /usr/lib/libxcb.so.1 (0xb4620000) /lib/ld-linux.so.2 (0xb7877000) librt.so.1 => /lib/i686/cmov/librt.so.1 (0xb4617000) libXau.so.6 => /usr/lib/libXau.so.6 (0xb4613000) libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0xb460e000) Zbigniew -- To UNSUBSCRIBE, email to debian-user-REQUEST@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org Archive: 201103131929.47444.cblasius@gmail.com">http://lists.debian.org/201103131929.47444.cblasius@gmail.com |
Octave crashed
Hi,
guys, if you forward a mail from a thread to a new recipient (in this case the pkg-octave-devel list), please include *all* relevant information in the first mail. I actually thought that we received that mail in error, because there was no mention of Debian *at all* in the mail - and even then, there's no mention of any problem in the forwarded mail, just some ldd outputs. On Sun, Mar 13, 2011 at 07:29:46PM +0100, Zbigniew Komarnicki wrote: > On Saturday 12 of March 2011 22:56:48 you wrote: > > 2011/3/12 Zbigniew Komarnicki <cblasius@gmail.com> > > > > > I do this but with no success. Thank you anyway. <snip> > > ldd /usr/bin/octave <snip>. Zbigniew, please remove all packages with 'atlas' in their name from the system, then try again. If it still crashes, open a bug against octave3.2, using reportbug. If it doesn't crash anymore, try with the atlas base package (libatlas3gf-base). Thanks Thomas -- To UNSUBSCRIBE, email to debian-user-REQUEST@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org Archive: 20110316191930.GA26343@bully">http://lists.debian.org/20110316191930.GA26343@bully |
Octave crashed
On Wednesday 16 of March 2011 20:19:30 Thomas Weber wrote:
> Hi, > > guys, if you forward a mail from a thread to a new recipient (in this > case the pkg-octave-devel list), please include *all* relevant > information in the first mail. I actually thought that we received that > mail in error, because there was no mention of Debian *at all* in the > mail - and even then, there's no mention of any problem in the forwarded > mail, just some ldd outputs. > Zbigniew, please remove all packages with 'atlas' in their name from the > system, then try again. If it still crashes, open a bug against > octave3.2, using reportbug. If it doesn't crash anymore, try with the > atlas base package (libatlas3gf-base). Thank you for your help. After removing all atlas package octave works correctly. If I install "libatlas3gf-base" the octave crashed as before. I'm very sorry for the forward mail from a thread to a new recipient. I was thinking, if such mail reach to pkg-octave-devel then you will be interested to check debian-user list for this thread, because it refer to octave. I'm sorry once again and in the future I will start new thread with full information. I have one more question: where first to signal if given program crashed? To debian-user list or to specific list e.g. *-devel ? Because also "scilab" crased by atlas package. After removing all atlas packages I check that scilab now works. http://lists.debian.org/debian-user/2011/03/msg01112.html > Thanks > Thomas Thank you, Zbigniew -- To UNSUBSCRIBE, email to debian-user-REQUEST@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org Archive: 201103171041.06924.cblasius@gmail.com">http://lists.debian.org/201103171041.06924.cblasius@gmail.com |
Octave crashed
On Thu, Mar 17, 2011 at 10:41:06AM +0100, Zbigniew Komarnicki wrote:
> On Wednesday 16 of March 2011 20:19:30 Thomas Weber wrote: > > Hi, > > > > guys, if you forward a mail from a thread to a new recipient (in this > > case the pkg-octave-devel list), please include *all* relevant > > information in the first mail. I actually thought that we received that > > mail in error, because there was no mention of Debian *at all* in the > > mail - and even then, there's no mention of any problem in the forwarded > > mail, just some ldd outputs. > > > Zbigniew, please remove all packages with 'atlas' in their name from the > > system, then try again. If it still crashes, open a bug against > > octave3.2, using reportbug. If it doesn't crash anymore, try with the > > atlas base package (libatlas3gf-base). > > Thank you for your help. > > After removing all atlas package octave works correctly. > > If I install "libatlas3gf-base" the octave crashed as before. > > I'm very sorry for the forward mail from a thread to a new recipient. > I was thinking, if such mail reach to pkg-octave-devel then you will be > interested to check debian-user list for this thread, because it refer to > octave. I'm sorry once again and in the future I will start new thread with > full information. It's not necessary to start a new thread, just give a short summary. I'm offline most of the time, though. So at the time I read your mail, I usually don't have net access. > I have one more question: where first to signal if given program crashed? That depends. If you think you are doing something wrong, asking on a user list is probably the best start. If you are somewhat sure that there's a bug, file a bug with reportbug. There's no black and white here, but lots of shades of grey. Now, please file a bug against Atlas using reportbug (which includes some helpful information for the atlas maintainer by default). Thomas -- To UNSUBSCRIBE, email to debian-user-REQUEST@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org Archive: 20110317204420.GB7494@bully">http://lists.debian.org/20110317204420.GB7494@bully |
Octave crashed
On Thursday 17 of March 2011 21:44:20 Thomas Weber wrote:
> It's not necessary to start a new thread, just give a short summary. > I'm offline most of the time, though. So at the time I read your mail, I > usually don't have net access. > > > I have one more question: where first to signal if given program crashed? > > That depends. If you think you are doing something wrong, asking on a > user list is probably the best start. If you are somewhat sure that > there's a bug, file a bug with reportbug. There's no black and white > here, but lots of shades of grey. > > Now, please file a bug against Atlas using reportbug (which includes > some helpful information for the atlas maintainer by default). > > Thomas Thank you. http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=576972 Zbigniew -- To UNSUBSCRIBE, email to debian-user-REQUEST@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org Archive: 201103190451.54535.cblasius@gmail.com">http://lists.debian.org/201103190451.54535.cblasius@gmail.com |
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