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Old 10-27-2011, 10:32 AM
Mathieu Malaterre
 
Default Trying to package 然anager

Dear all,

*I have been trying to get micromanager to compile on debian. It
currently fails with (*). My guess is that clojure is a little
outdated for this package. Did anyone work on packaging recent clojure
release ?

thanks

(*)
cp -R src/org classes/
java -server -cp
../MMCoreJ_wrap/MMCoreJ.jar:/usr/share/java/clojure.jar:/usr/share/java/ij.jar:../mmstudio/MMJ_.jar:/usr/share/java/bsh-2.0b4.jar:./src
-Djava.library.path=. -Djava.awt.headless=true
-Dclojure.compile.path=classes -server clojure.lang.Compile
org.micromanager.acq-engine
Compiling org.micromanager.acq-engine to classes
Exception in thread "main" java.lang.RuntimeException:
java.lang.ClassNotFoundException:
org.micromanager.acq_engine$loading__6309__auto___ _1
* * * *at clojure.lang.Compiler$FnExpr.getCompiledClass(Comp iler.java:3502)
* * * *at clojure.lang.Compiler$FnExpr.emit(Compiler.java:35 41)
* * * *at clojure.lang.Compiler$InvokeExpr.emit(Compiler.jav a:2788)
* * * *at clojure.lang.Compiler.compile1(Compiler.java:5041)
* * * *at clojure.lang.Compiler.compile1(Compiler.java:5032)
* * * *at clojure.lang.Compiler.compile(Compiler.java:5095)
* * * *at clojure.lang.RT.compile(RT.java:358)
* * * *at clojure.lang.RT.load(RT.java:397)
* * * *at clojure.lang.RT.load(RT.java:371)
* * * *at clojure.core$load__6449$fn__6458.invoke(core.clj:4 171)
* * * *at clojure.core$load__6449.doInvoke(core.clj:4170)
* * * *at clojure.lang.RestFn.invoke(RestFn.java:413)
* * * *at clojure.core$load_one__6379.invoke(core.clj:4007)
* * * *at clojure.core$compile__6464$fn__6466.invoke(core.cl j:4181)
* * * *at clojure.core$compile__6464.invoke(core.clj:4180)
* * * *at clojure.lang.Var.invoke(Var.java:359)
* * * *at clojure.lang.Compile.main(Compile.java:56)
Caused by: java.lang.ClassNotFoundException:
org.micromanager.acq_engine$loading__6309__auto___ _1
* * * *at java.net.URLClassLoader$1.run(URLClassLoader.java: 217)
* * * *at java.security.AccessController.doPrivileged(Native Method)
* * * *at java.net.URLClassLoader.findClass(URLClassLoader.j ava:205)
* * * *at java.lang.ClassLoader.loadClass(ClassLoader.java:3 21)
* * * *at sun.misc.Launcher$AppClassLoader.loadClass(Launche r.java:294)
* * * *at java.lang.ClassLoader.loadClass(ClassLoader.java:2 66)
* * * *at java.lang.Class.forName0(Native Method)
* * * *at java.lang.Class.forName(Class.java:264)
* * * *at clojure.lang.RT.classForName(RT.java:1504)
* * * *at clojure.lang.Compiler$FnExpr.getCompiledClass(Comp iler.java:3493)
* * * *... 16 more
make[2]: *** [MMAcqEngine.jar] Error 1
make[2]: Leaving directory `/tmp/buildd/micromanager-1.4.6/acqEngine'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/tmp/buildd/micromanager-1.4.6'
dh_auto_build: make -j1 returned exit code 2






--
Mathieu


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Old 10-27-2011, 10:35 AM
Mathieu Malaterre
 
Default Trying to package 然anager

Sorry for the noise, just realize there is another package:

http://packages.qa.debian.org/c/clojure1.2.html


On Thu, Oct 27, 2011 at 6:32 AM, Mathieu Malaterre
<mathieu.malaterre@gmail.com> wrote:
> Dear all,
>
> *I have been trying to get micromanager to compile on debian. It
> currently fails with (*). My guess is that clojure is a little
> outdated for this package. Did anyone work on packaging recent clojure
> release ?
>
> thanks
>
> (*)
> cp -R src/org classes/
> java -server -cp
> ../MMCoreJ_wrap/MMCoreJ.jar:/usr/share/java/clojure.jar:/usr/share/java/ij.jar:../mmstudio/MMJ_.jar:/usr/share/java/bsh-2.0b4.jar:./src
> -Djava.library.path=. -Djava.awt.headless=true
> -Dclojure.compile.path=classes -server clojure.lang.Compile
> org.micromanager.acq-engine
> Compiling org.micromanager.acq-engine to classes
> Exception in thread "main" java.lang.RuntimeException:
> java.lang.ClassNotFoundException:
> org.micromanager.acq_engine$loading__6309__auto___ _1
> * * * *at clojure.lang.Compiler$FnExpr.getCompiledClass(Comp iler.java:3502)
> * * * *at clojure.lang.Compiler$FnExpr.emit(Compiler.java:35 41)
> * * * *at clojure.lang.Compiler$InvokeExpr.emit(Compiler.jav a:2788)
> * * * *at clojure.lang.Compiler.compile1(Compiler.java:5041)
> * * * *at clojure.lang.Compiler.compile1(Compiler.java:5032)
> * * * *at clojure.lang.Compiler.compile(Compiler.java:5095)
> * * * *at clojure.lang.RT.compile(RT.java:358)
> * * * *at clojure.lang.RT.load(RT.java:397)
> * * * *at clojure.lang.RT.load(RT.java:371)
> * * * *at clojure.core$load__6449$fn__6458.invoke(core.clj:4 171)
> * * * *at clojure.core$load__6449.doInvoke(core.clj:4170)
> * * * *at clojure.lang.RestFn.invoke(RestFn.java:413)
> * * * *at clojure.core$load_one__6379.invoke(core.clj:4007)
> * * * *at clojure.core$compile__6464$fn__6466.invoke(core.cl j:4181)
> * * * *at clojure.core$compile__6464.invoke(core.clj:4180)
> * * * *at clojure.lang.Var.invoke(Var.java:359)
> * * * *at clojure.lang.Compile.main(Compile.java:56)
> Caused by: java.lang.ClassNotFoundException:
> org.micromanager.acq_engine$loading__6309__auto___ _1
> * * * *at java.net.URLClassLoader$1.run(URLClassLoader.java: 217)
> * * * *at java.security.AccessController.doPrivileged(Native Method)
> * * * *at java.net.URLClassLoader.findClass(URLClassLoader.j ava:205)
> * * * *at java.lang.ClassLoader.loadClass(ClassLoader.java:3 21)
> * * * *at sun.misc.Launcher$AppClassLoader.loadClass(Launche r.java:294)
> * * * *at java.lang.ClassLoader.loadClass(ClassLoader.java:2 66)
> * * * *at java.lang.Class.forName0(Native Method)
> * * * *at java.lang.Class.forName(Class.java:264)
> * * * *at clojure.lang.RT.classForName(RT.java:1504)
> * * * *at clojure.lang.Compiler$FnExpr.getCompiledClass(Comp iler.java:3493)
> * * * *... 16 more
> make[2]: *** [MMAcqEngine.jar] Error 1
> make[2]: Leaving directory `/tmp/buildd/micromanager-1.4.6/acqEngine'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/tmp/buildd/micromanager-1.4.6'
> dh_auto_build: make -j1 returned exit code 2
>
>
>
>
>
>
> --
> Mathieu
>



--
Mathieu


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