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Old 07-07-2012, 09:39 AM
 
Default Bug#680610: ITP: predictprotein -- A service for sequence analysis and the prediction of protein structure and function

Package: wnpp
Severity: wishlist
Owner: s.domke@wzw.tum.de


* Package name : predictprotein
Version : 1.0.0
Upstream Author : Laszlo Kajan <lkajan@rostlab.org>
* URL : http://www.predictprotein.org//
* License : GPL
Programming Lang: Perl
Description : A service for sequence analysis and the prediction of protein structure and function

PredictProtein is a sequence analysis suite providing prediction of protein
structure and function. It takes protein sequences or alignments as input
and provides the following per-residue or whole protein annotations: multiple
sequence alignments, PROSITE sequence motifs, low-complexity regions, nuclear
localisation signals, regions lacking regular structure (NORS), secondary
structure, solvent accessibility, globular regions, transmembrane helices,
coiled-coil regions, structural switch regions, disulfide-bonds, sub-cellular
localization, disordered regions, B-value flexibility, protein-protein
interaction sites and protein-DNA interaction sites. Upon request fold
recognition by prediction-based threading, CHOP domain assignments,
predictions of transmembrane strands and inter-residue contacts are also
available.



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