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Old 07-06-2012, 04:47 PM
Laszlo Kajan
 
Default Bug#680539: ITP: hmmer2 -- profile hidden Markov models for protein sequence analysis (version 2)

Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan <lkajan@rostlab.org>

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* Package name : hmmer2
Version : 2.3.2
Upstream Author : Sean Eddy <eddy@genetics.wustl.edu>
* URL : ftp://selab.janelia.org/pub/software/hmmer/
* License : GPL-2+
Programming Lang: C
Description : profile hidden Markov models for protein sequence analysis (version 2)

HMMER is an implementation of profile hidden Markov model methods for
sensitive searches of biological sequence databases using multiple sequence
alignments as queries.
.
Given a multiple sequence alignment as input, HMMER builds a statistical
model called a "hidden Markov model" which can then be used as a query into
a sequence database to find (and/or align) additional homologues of the
sequence family.

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