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Old 07-04-2012, 02:37 PM
 
Default Bug#680233: ITP: lowcompseg -- identification and masking of segments of low compositional complexity in amino acid sequences

Package: wnpp
Severity: wishlist
Owner: lkajan@rostlab.org


* Package name : seg
Version : 1994101801
Upstream Author : John Wootton <wootton@ncbi.nlm.nih.gov> and Scott Federhen <federhen@ncbi.nlm.nih.gov>
* URL : ftp://ftp.ncbi.nih.gov/pub/seg/seg/README
* License : In public domain
Programming Lang: C
Description : identification and masking of segments of low compositional complexity in amino acid sequences

SEG is a program for identifying and masking segments of low compositional complexity in amino acid sequences.
.
seg divides sequences into contrasting segments of low-complexity and high-complexity. Low-complexity segments defined by the
algorithm represent "simple sequences" or "compositionally-biased regions".
.
This program is inappropriate for masking nucleotide sequences and, in fact, may strip some nucleotide ambiguity codes from nt. sequences as they are being read.



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