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Old 05-16-2012, 05:48 PM
Steffen Moeller
 
Default Bug#673182: ITP: pscan -- finds overrepresented transcription factor binding sites

Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <steffen_moeller@gmx.de>

* Package name : pscan
Version : 1.2.1
* URL : http://159.149.109.9/pscan/
* License : unclear
Programming Lang: C++
Description : finds overrepresented transcription factor binding sites

This packages takes a motif database of transcription factor binding sites
(TFBS) and expects a list of genes that are found co-regulated. It then points to
those TFBS that seem statistically most unlikely to be observed by chance.


The package already lives at
Vcs-Browser: http://svn.debian.org/viewvc/debian-med/trunk/packages/pscan

Cheers,

Steffen



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