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Old 12-14-2011, 03:00 PM
Andreas Tille
 
Default Bug#652074: ITP: cd-hit -- suite of programs designed to quickly group sequences

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name : cd-hit
Version : 4.5.6
Upstream Author : Weizhong Li <liwz@sdsc.edu>
* URL : http://weizhong-lab.ucsd.edu/cd-hit/
* License : GPLv2
Programming Lang: C++, Perl
Description : suite of programs designed to quickly group sequences
cd-hit contains a number of programs designed to quickly group
sequences. cd-hit groups proteins into clusters that meet a user-defined
similarity threshold. cd-hit-est is similar to cd-hit, but designed to
group nucleotide sequences (without introns). cd-hit-est-2d is similar
to cd-hit-2d but designed to compare two nucleotide datasets. A number
of other related programs are also in this package. Please see the
cd-hit user manual, also part of this package, for further information.


The packaging is done in the Debian Med team and is available in Debian
Med SVN at

Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/cd-hit/trunk/

The only remaining issue is to clarify source + copyright of the included
PDF documentation.

This WNPP bug solves also bug #651983 - qiime: Recommends: not available
'cd-hit' package.



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