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Old 10-27-2011, 08:22 PM
Mathieu Malaterre
Default Bug#646853: ITP: micromanager -- Microscopy Software

Package: wnpp
Severity: wishlist
Owner: Mathieu Malaterre <mathieu.malaterre@gmail.com>

* Package name : micromanager
Version : 1.4.6
Upstream Author : University of California, San Francisco
* URL : http://valelab.ucsf.edu/~MM/MMwiki/index.php/Micro-Manager
* License : GPL
Programming Lang: Java,C++
Description : Microscopy Software

µManager is a software package for control of automated microscopes. It lets
you execute common microscope image acquisition strategies such as time-lapses,
multi-channel imaging, z-stacks, and combinations thereof. μManager works with
microscopes from all four major manufacturers (Leica, Nikon, Olympus and
Zeiss), most scientific-grade cameras and many peripherals (stages, filter
wheels, shutters, etc.) used in microscope imaging (check the list of supported
hardware). Since μManager runs as a plugin to ImageJ, image analysis routines
are available within the application.
Unencumbered code provides a GUI for microscope image acquisition, a hardware
interface layer and hardware interfacing for:
- ASI stages, filter wheels and shutters
- Arduino
- Conix filter changer
- Velleman K8055 and K8061 digital IO boards
- Leica DMI microscopes
- Ludl shutters, stages and filter Wheels
- Nikon TE2000 microscope
- Physik Instrumente stages
- Pecon stage incubators
- Prior shutters, stages and filter wheels
- Spectral LMM5 laser controller
- Sutter shutters, filter wheels and DG4
- Vincent Uniblitz shutters
- Yokogawa spinning disk confocal CSU22 and CSUX
- Zeiss microscopes (two 'generations')
- iidc1394 compatible cameras (through libdc1394)

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