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Old 06-16-2011, 11:17 PM
Steffen Moeller
 
Default Bug#630753: ITP: snap -- gene finding with HMMs in Eukaryotes and Prokaryotes

Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <steffen_moeller@gmx.de>

* Package name : snap
* URL : http://homepage.mac.com/iankorf/
* License : GPL
Description : gene finding with HMMs in Eukaryotes and Prokaryotes

The package is basically ready, demanding only man pages to be contributed.
It will be located with the Debian Med project at htp://debianmed.alioth.debian.org.



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Old 06-17-2011, 11:30 PM
"brian m. carlson"
 
Default Bug#630753: ITP: snap -- gene finding with HMMs in Eukaryotes and Prokaryotes

On Fri, Jun 17, 2011 at 01:17:10AM +0200, Steffen Moeller wrote:
> * Package name : snap
> * URL : http://homepage.mac.com/iankorf/
> * License : GPL
> Description : gene finding with HMMs in Eukaryotes and Prokaryotes

It's my understanding (and correct me if I'm wrong) that cells are
either eukaryotic or prokaryotic; there isn't a third class. If so,
it's probably better to use a term that includes both, since as it reads
now, it implies that it handles these two types, but not some unknown
third.

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brian m. carlson / brian with sandals: Houston, Texas, US
+1 832 623 2791 | http://www.crustytoothpaste.net/~bmc | My opinion only
OpenPGP: RSA v4 4096b: 88AC E9B2 9196 305B A994 7552 F1BA 225C 0223 B187
 
Old 06-18-2011, 05:39 PM
Ted Dunning
 
Default Bug#630753: ITP: snap -- gene finding with HMMs in Eukaryotes and Prokaryotes

There is a long standing argument about whether Archaea are either.
I think that the current received wisdom is the so-called three kingdom division into Acheae, Bacteria and Eukaryota.


See*http://en.wikipedia.org/wiki/Archaea for a popularized account.

On Sat, Jun 18, 2011 at 1:30 AM, brian m. carlson <sandals@crustytoothpaste.net> wrote:


On Fri, Jun 17, 2011 at 01:17:10AM +0200, Steffen Moeller wrote:

> * Package name * *: snap

> * URL * * * * * * : http://homepage.mac.com/iankorf/

> * License * * * * : GPL

> * Description * * : gene finding with HMMs in Eukaryotes and Prokaryotes



It's my understanding (and correct me if I'm wrong) that cells are

either eukaryotic or prokaryotic; there isn't a third class. *If so,

it's probably better to use a term that includes both, since as it reads

now, it implies that it handles these two types, but not some unknown

third.



--

brian m. carlson / brian with sandals: Houston, Texas, US

+1 832 623 2791 | http://www.crustytoothpaste.net/~bmc | My opinion only

OpenPGP: RSA v4 4096b: 88AC E9B2 9196 305B A994 7552 F1BA 225C 0223 B187
 

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