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Old 06-07-2011, 11:37 PM
Charles Plessy
Default Bug#629597: ITP: bedtools -- suite of utilities for comparing genomic features

Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>

Package name : bedtools
Version : 2.12.0
Upstream Author : Aaron Quinlan
URL : http://code.google.com/p/bedtools/
License : GPL-2+
Programming Lang: C++
Description : suite of utilities for comparing genomic features

The BEDTools utilities allow one to address common genomics tasks such as
finding feature overlaps and computing coverage. The utilities are largely
based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using
BEDTools, one can develop sophisticated pipelines that answer complicated
research questions by streaming several BEDTools together.

BEDTools is very popular in its field and will be a nice addition to Debian. A
package is almost ready at http://git.debian.org/?p=debian-med/bedtools.git

Have a nice day,

Charles Plessy
Debian Med packaging team
Tsurumi, Kanagawa, Japan

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