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Old 06-02-2011, 05:45 AM
Charles Plessy
 
Default Bug#628882: ITP: r-bioc-edger -- Empirical analysis of digital gene expression data in R

Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>

Package name : r-bioc-edger
Version : 2.2.5
Upstream Author : Mark Robinson <mrobinson@wehi.edu.au>, Davis McCarthy <dmccarthy@wehi.edu.au>, Gordon Smyth <smyth@wehi.edu.au>
URL : http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
License : LGPL-2+
Programming Lang: R
Description : Empirical analysis of digital gene expression data in R

Bioconductor package for differential expression analysis of whole
transcriptome sequencing (RNA-seq) and digital gene expression
profiles with biological replication. It uses empirical Bayes
estimation and exact tests based on the negative binomial
distribution. It is also useful for differential signal analysis with
other types of genome-scale count data.

(I use it at work)



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