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Old 05-30-2011, 05:06 AM
Charles Plessy
 
Default Bug#628548: ITP: r-bioc-limma -- linear models for microarray data

Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>

Package name : r-bioc-limma
Version : 3.8.2
Upstream Author : Gordon Smyth <smyth@wehi.edu.au>
URL : http://bioinf.wehi.edu.au/limma/
License : GPL, LGPL
Programming Lang: R, C
Description : linear models for microarray data

A Bioconductor package for the analysis of gene expression microarray data,
especially the use of linear models for analysing designed experiments and the
assessment of differential expression. The package includes pre-processing
capabilities for two-colour spotted arrays. The differential expression methods
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.

r-bioc-limma is needed to package edgeR (r-bioc-edger), which is quite popular
for the analysis of high-throughput transcriptome sequencing experiments.



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