FAQ Search Today's Posts Mark Forums Read
» Video Reviews

» Linux Archive

Linux-archive is a website aiming to archive linux email lists and to make them easily accessible for linux users/developers.


» Sponsor

» Partners

» Sponsor

Go Back   Linux Archive > Debian > Debian Development

 
 
LinkBack Thread Tools
 
Old 04-14-2011, 12:33 AM
Charles Plessy
 
Default Bug#622700: ITP: fastx-toolkit -- FASTQ/A short nucleotide reads pre-processing tools

Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>

Package name : fastx-toolkit
Version : 0.0.13
Upstream Author : Assaf Gordon <gordon@cshl.edu>
URL : http://hannonlab.cshl.edu/fastx_toolkit/
License : AGPL-3+, MIT
Programming Lang: C
Description : FASTQ/A short nucleotide reads pre-processing tools

The FASTX-Toolkit is a collection of command line tools for preprocessing
short nucleotide reads in FASTA and FASTQ formats, usually produced by
Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
files is mapping (aligning) the sequences to reference genomes or other
databases using specialized programs like BWA, Bowtie and many many others.
However, it is sometimes more productive to preprocess the FASTA/FASTQ files
before mapping the sequences to the genome—manipulating the sequences to
produce better mapping results. The FASTX-Toolkit tools perform some of these
preprocessing tasks.



--
To UNSUBSCRIBE, email to debian-devel-REQUEST@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org
Archive: 20110414003331.3299.5874.reportbug@chouca.igloo">h ttp://lists.debian.org/20110414003331.3299.5874.reportbug@chouca.igloo
 

Thread Tools




All times are GMT. The time now is 12:08 AM.

VBulletin, Copyright ©2000 - 2014, Jelsoft Enterprises Ltd.
Content Relevant URLs by vBSEO ©2007, Crawlability, Inc.
Copyright ©2007 - 2008, www.linux-archive.org