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Old 02-22-2011, 07:17 PM
Default Bug#614657: ITP: clonalframe -- inference of bacterial microevolution using multilocus sequence data

Package: wnpp
Severity: wishlist
Owner: andreas@an3as.eu

* Package name : clonalframe
Version : 1.2
Upstream Author : Xavier Didelot <xavier.didelot@gmail.com>
* URL : http://www.xavierdidelot.xtreemhost.com/clonalframe.htm
* License : GPL
Programming Lang: C++
Description : inference of bacterial microevolution using multilocus sequence data
ClonalFrame identifies the clonal relationships between the members of
a sample, while also estimating the chromosomal position of homologous
recombination events that have disrupted the clonal inheritance.
ClonalFrame can be applied to any kind of sequence data, from a single
fragment of DNA to whole genomes. It is well suited for the analysis of
MLST data, where 7 gene fragments have been sequenced, but becomes
progressively more powerful as the sequenced regions increase in length
and number up to whole genomes. However, it requires the sequences to be
aligned. If you have genomic data that is not aligned, we recommend
using Mauve which produces alignment of whole bacterial genomes in
exactly the format required for analysis with ClonalFrame.

The package will be maintained in Debian Med team and is available at
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/clonalframe/trunk

-- System Information:
Debian Release: squeeze/sid
APT prefers oldstable
APT policy: (500, 'oldstable'), (50, 'unstable')
Architecture: i386 (i686)

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