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Old 11-22-2007, 09:47 AM
Charles Plessy
 
Default Bug#452373: ITP: glam2 -- Gapped Local Alignment of Motifs

Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>

Package name : glam2
Version : 1023
Upstream Authors: Martin C Frith <martin@cbrc.jp>
Timothy L Bailey <t.bailey@imb.uq.edu.au>
URL : http://bioinformatics.org.au/glam2
License : Public domain
Programming Lang: C
Description : Gapped Local Alignment of Motifs

GLAM2 is a software package for finding motifs in sequences, typically
amino-acid or nucleotide sequences. A motif is a re-occurring sequence
pattern: typical examples are the TATA box and the CAAX prenylation
motif. The main innovation of GLAM2 is that it allows insertions and
deletions in motifs.

Packaging was started by Steffen Möller, and is almost finished. There
is a PDF file with no sources, but this time one of the authors is a
friend, so getting them will be piece of cake.

--
Charles Plessy
Debian-Med packaging team
Wakō, Saitama, Japan



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