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Old 11-24-2008, 12:39 PM
Andreas Tille
Default Bug#506752: ITP: ssake -- assembling millions of very short DNA sequences

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tillea@rki.de>

* Package name : ssake
Version : 3.2.1
Upstream Author : Rene Warren <rwarrens * bcgsc.ca>
* URL : http://www.bcgsc.ca/platform/bioinfo/software/ssake
* License : GPL 2+
Programming Lang: Perl
Description : assembling millions of very short DNA sequences
SSAKE is a genomics application for assembling millions of very short
DNA sequences.
The Short Sequence Assembly by K-mer search and 3' read Extension
(SSAKE) is a genomics application for aggressively assembling
millions of short nucleotide sequences by progressively searching for
perfect 3'-most k-mers using a DNA prefix tree. SSAKE is designed to
help leverage the information from short sequences reads by
stringently clustering them into contigs that can be used to
characterize novel sequencing targets.

Preliminary packaging stuff can be found at
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ssake/trunk/

-- System Information:
Debian Release: lenny/sid
APT prefers testing
APT policy: (501, 'testing'), (50, 'unstable'), (5, 'experimental')
Architecture: i386 (i686)

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