FAQ Search Today's Posts Mark Forums Read
» Video Reviews

» Linux Archive

Linux-archive is a website aiming to archive linux email lists and to make them easily accessible for linux users/developers.


» Sponsor

» Partners

» Sponsor

Go Back   Linux Archive > Debian > Debian Development

 
 
LinkBack Thread Tools
 
Old 11-24-2008, 12:39 PM
Andreas Tille
 
Default Bug#506752: ITP: ssake -- assembling millions of very short DNA sequences

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tillea@rki.de>

* Package name : ssake
Version : 3.2.1
Upstream Author : Rene Warren <rwarrens * bcgsc.ca>
* URL : http://www.bcgsc.ca/platform/bioinfo/software/ssake
* License : GPL 2+
Programming Lang: Perl
Description : assembling millions of very short DNA sequences
SSAKE is a genomics application for assembling millions of very short
DNA sequences.
.
The Short Sequence Assembly by K-mer search and 3' read Extension
(SSAKE) is a genomics application for aggressively assembling
millions of short nucleotide sequences by progressively searching for
perfect 3'-most k-mers using a DNA prefix tree. SSAKE is designed to
help leverage the information from short sequences reads by
stringently clustering them into contigs that can be used to
characterize novel sequencing targets.

Preliminary packaging stuff can be found at
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ssake/trunk/

-- System Information:
Debian Release: lenny/sid
APT prefers testing
APT policy: (501, 'testing'), (50, 'unstable'), (5, 'experimental')
Architecture: i386 (i686)



--
To UNSUBSCRIBE, email to debian-devel-REQUEST@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org
 

Thread Tools




All times are GMT. The time now is 12:54 PM.

VBulletin, Copyright ©2000 - 2014, Jelsoft Enterprises Ltd.
Content Relevant URLs by vBSEO ©2007, Crawlability, Inc.
Copyright 2007 - 2008, www.linux-archive.org