Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tillea@rki.de>

* Package name : agdbnet
Version : 1.0.0
Upstream Author : Keith Jolley <keith.jolley@medawar.ox.ac.uk>
* URL : http://pubmlst.org/software/database/agdbnet/
* License : GPL
Programming Lang: Perl
Description : antigen sequence database software for web-based bacterial typing

AgdbNet facilitates simultaneous BLAST querying of multiple loci using
either nucleotide or peptide sequences. Databases are described by XML
files and can have any number of loci, which may be defined by nucleotide
and/or peptide sequences. The databases can optionally have integral
isolate tables so that information about representative isolates can
be retrieved or they may be configured to query external isolate databases,
such as those hosted on PubMLST.org.
.
The software is used on a number of public bacterial typing databases:
* Neisseria PorA variable regions (http://neisseria.org/nm/typing/pora/),
PorB (http://neisseria.org/nm/typing/porb/),
FetA (http://neisseria.org/nm/typing/feta/)
* Campylobacter flaA (http://hercules.medawar.ox.ac.uk/flaA/)
* Streptococcus equi seM (http://pubmlst.org/szooepidemicus/seM/)

The package will be group maintained by the Debian Med packaging
team. Preliminary packaging stuff is available at

http://svn.debian.org/wsvn/debian-med/trunk/packages/agdbnet/trunk/?rev=0&sc=0

Kind regards

Andreas.

-- System Information:
Debian Release: lenny/sid
APT prefers testing
APT policy: (501, 'testing'), (50, 'unstable'), (5, 'experimental')
Architecture: i386 (i686)



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