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Old 07-21-2008, 02:59 PM
Steffen Moeller
 
Default Bug#491714: ITP: libtfbs-perl -- module to scan DNA sequences with a position weight matrix

Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <steffen_moeller@gmx.de>

* Package name : libtfbs-perl
Version : 0.5
* URL : http://tfbs.genereg.net/
* License : GPL, Artistic
Programming Lang: C, Perl
Description : module to scan DNA sequences with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.



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